GST Updated Rules: Effective From April 1, 2025 and June 1, 2025

Taxpayers should stay updated on the new rules to avoid any penalty or interest and ensure compliance.

Changes In GST Rule Changes Effective April and June 2025: Know The Updates Introduced E-invoicing and More

Nidhi | May 13, 2025 |

GST Updated Rules: Effective From April 1, 2025 and June 1, 2025

Updates to Rules in GST: Effective From April 1, 2025 and June 1, 2025

Starting from April 1, 2025, and June 1, 2025, there are some important changes introduced to the GST rules. Taxpayers should stay updated on the new rules to avoid any penalty or interest and ensure compliance. Here is what you need to know about the updated GST rules.

Table of Content
  1. Changes in GST Rules Applicable From April 1, 2025
  2. Changes Applicable from June 1, 2025
  3. Other Important Points for E-Invoice

Changes in GST Rules Applicable From April 1, 2025

E-Invoice Generation

From 1st April 2025, businesses with an annual turnover of Rs. 10 crore or more are required to generate E-invoices on the Invoice Registration Portal (IRP) within 30 days of issuing an invoice.

Previously, this rule only applied to businesses with a turnover of Rs. 100 crore or above. Now, the limit has been cut to Rs. 10 crore, as per the GST Advisory dated 5th November 2024. Therefore, an invoice that is older than 30 days cannot be submitted on IRP.

Two-Factor Login Now Must for GST Portal

From 1st April 2025, all users are required to complete an extra step while logging into the GST system for e-invoices and e-way bills. Along with your usual login ID and password, you will also need to enter a code (OTP) sent to your registered phone or use the Sandes app.

This extra layer of security has been introduced to keep your account safe from unauthorized access.

Manual Entry of HSN Codes No Longer Needed in GSTR-1

As per GSTN advisory, the manual entry of HSN codes and selecting them from a dropdown in Table 12 of GSTR-1 and GSTR-1A will no longer be needed. This change is already in effect from the return period starting May 2025. Table 12 has also been divided into B2B and B2C supplies, and validation checks are added to verify the taxable value and tax amount.

No Modifications in the Values in Table 3.2 of GSTR-3B

Starting from the April 2025 tax period, inter-state supply details auto-filled in Table 3.2 of GSTR-3B, which relates to sales made to Composition dealers, unregistered persons, and UIN holders, will no longer be editable, as per the GST advisory dated 11 April 2025.

GSTR-3B must now be filed using only the system-generated values, which are based on details filed in GSTR-1A or through Form GSTR-1/IFF. Therefore, taxpayers cannot make any changes or modifications in the auto-filled values of Table 3.2 of GSTR-3B. It can only be done by revising the related values in the relevant tables of GSTR-1A or through Form GSTR-1/IFF in the returns filed for the following tax periods.

Changes Applicable from June 1, 2025

To ensure uniformity and avoid duplicate entries, invoice numbers entered in any format (like “abc“, “ABC“, or “Abc“) will now be automatically changed to capital words (i.e., ABC) before generating the IRN. This matches the way invoice numbers are already handled in GSTR-1, where the system does not care about letter case.

However, taxpayers do not need to manually change the invoice number. The IRN system will automatically do it. But from 01 June 2025, it is advised to start using uppercase letters while generating invoices to stay in line with the system.

Other Important Points for E-Invoice

  • As per GST Notification 10/2023-Central Tax dated 10-May-2023, businesses with an average annual turnover of Rs. 5 crore or more in any financial year from 2017-18 to 2024-25 must start generating e-invoices from 1st August 2023. From 1st April 2025, this rule is still applicable, even if the turnover decreases in the current financial year. Therefore, businesses should review their turnover at the end of each financial year to determine if e-invoicing will be required in the next year. Once e-invoicing applies, it cannot be cancelled in future years due to the turnover limit.
  • At present, E-invoice is effective for Business to Business(B2B), Business to Government (B2G) & Export supply transactions only.
  • E-invoicing is not required for supplies that attract a NIL rate or are fully exempt. For these supplies, a Bill of Supply is needed instead of a Tax Invoice. However, if a business is supplying both taxable and exempt goods or services to a registered person (invoice-cum-bill of supply), e-invoicing is mandatory, as per Rule 46A of CGST Rules, 2017.
  • As per Section 122(1), a penalty for not generating an e-invoice or for generating a false e-invoice is 100% of the tax due or Rs. 10,000, whichever is higher.
  • Under Section 122(3), a penalty of up to Rs. 25,000 may be imposed if the e-invoice is not generated according to the rules specified in the act.
  • The new 30-day rule for e-invoicing applies to all types of documents, including invoices, debit notes, and credit notes.

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